Daniel S. Katz on Nostr: From Sheeba Samuel and npub1cxsyc…lj9sf "Computational reproducibility of Jupyter ...
From Sheeba Samuel and npub1cxsycyj8v0ctqcz7zzt5unl6zqk8vgq48tnnvm2jdxyxq7wtlacs8lj9sf (npub1cxs…j9sf)
"Computational reproducibility of Jupyter notebooks from biomedical publications"
https://arxiv.org/abs/2308.07333
Found 27271 notebooks in 2660 GitHub repositories associated with 3467 articles
22578 notebooks were in Python, including 15817 that had dependencies declared in requirement files
For 10388, all declared dependencies could be installed successfully
1203 notebooks ran through without any errors
879 produced the original results
"Computational reproducibility of Jupyter notebooks from biomedical publications"
https://arxiv.org/abs/2308.07333
Found 27271 notebooks in 2660 GitHub repositories associated with 3467 articles
22578 notebooks were in Python, including 15817 that had dependencies declared in requirement files
For 10388, all declared dependencies could be installed successfully
1203 notebooks ran through without any errors
879 produced the original results